Convert a LongTable assay into a BumpyMatrix object — .assayToBumpyMatrix • CoreGx

Convert a LongTable assay into a BumpyMatrix object

Usage

.assayToBumpyMatrix(LT, assay, rows, cols, sparse = TRUE)

Arguments

LT: LongTable with assay to convert into BumpyMatrix
assay: character(1) A valid assay name in LT, as returned by assayNames(LT).
rows: character() The rownames associated with the assay rowKey
cols: character() The names associated with the assay colKey
sparse: logical(1) Should the BumpyMatrix be sparse (i.e., is the assay sparse).

Value

BumpyMatrix containing the data from assay.