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BHKLab Handbook

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bhklab/handbook

BHKLab Handbook

bhklab/handbook

General
General
- Mission Statement
- Code Of Conduct
  Code Of Conduct
- Summary Of Work
  Summary Of Work
- Communications
  Communications
  - BHKLab Calendar
  - BHKLab Gmail
- Meetings
  Meetings
- Presentations
  Presentations
  - Presentations Database
  - Presentation Tools
- Manuscripts
  Manuscripts
- Projects
  Projects
Disciplines
Disciplines
- Data Science
  Data Science
  - Data Curation
    
    Data Curation
    
    Clinical Trial Curation
    
    Clinical Trial Curation
- Machine Learning
  Machine Learning
- Bioinformatics
  Bioinformatics
  - Data Types
    Data Types
    
    RNA-Seq
  - STAR Alignment Guide
  - DESeq2
- Pharmacogenomics
  Pharmacogenomics
- Imaging
  Imaging
  - Radiomics
    
    Radiomics
  - Tools
    
    Tools
    
    QIPCM
    
    QIPCM
    
    Querying Data from the QIPCM PACS
Software Development
Software Development
- Development Environment
  Development Environment
  - Shells
    
    Shells
  - Integrated Development Environments (IDEs)
    
    Integrated Development Environments (IDEs)
  - Package Managers
    
    Package Managers
  - CLI Tools
    
    CLI Tools
  - Containerization
    
    Containerization
- Languages
  Languages
  - Javascript Typescript
    
    Javascript Typescript
  - Markdown
    
    Markdown
    
    Mkdocs
    
    Mkdocs
    
    Tabbed Code/Content Blocks
  - Python
    
    Python
  - R
    
    R
    
    Tidyverse
    
    Tidyverse
    
    Plotting with ggplot2
  - Rust
    
    Rust
- Version Control
  Version Control
  - Git
    Git
    
    Introduction
    
    Quick Git Tips
  - Code Reviews
    Code Reviews
    
    Introduction to Code Reviews
    
    Mindsets in Code Reviews
    
    Common Challenges and Solutions in Code Reviews
    
    Conducting a Review
    
    Code Review Presentation
- Remote Development
  Remote Development
  - High Performance Computing for Health
    
    High Performance Computing for Health
  - Google Cloud Platform
    
    Google Cloud Platform
    
    Commonly Used GCP Services
- Cloud
  Cloud
  - Compute canada cloud
    Compute canada cloud
    
    Introduction To Compute Canada Cloud
Onboarding / Offboarding
Onboarding / Offboarding
- Onboarding
  Onboarding
- Offboarding
  Offboarding
Contributing
Contributing

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