Handbook Changes Over Time#

Changelog#

add a page for DESeq (#91) (73d51b6)
add angular commit description to contributing (#100) (cd6ee02)
add concurrency settings to GitHub workflows to prevent workflows pushing to gh-pages at the same time from failing (6735fd5)
add documentation on code-reviews, and embed the presented slides (#111) (e03e6ef)
add presentation tools and database (#108) (9c81b17)
add QIPCM image retrieval guide (#102) (55cebe5)
add table of contents to Confluence SOW tutorial page (#99) (d73f29b)
added "basics of RNAseq" under Disciplines/Bioinformatics/Data_Types (#88) (c6390aa)
added journal club md (#89) (1f9557f)
Added Owl page under General/Meetings/ (#90) (3982918)
added page on BHKlab meeting under General/Meetings/ (#85) (f534b03)
added project tracking (#94) (a1f250e)
added radiomics-meeting-page under General/Meetings (#83) (680f1d4)
added sow tutorial page under General (#82) (b8ce45c)
Added tidyverse page under software_development/languages/R (#87) (1a9c2a1)
cgeady add slicer info (#109) (8779235)
Creating vpn page (#95) (d5c9d8a)
migrate Clinical Trial Curation page from BHKLab Confluence (#105) (fe2386b)
update directory structure with all section heading pages for assigned pages for tutorial (#58) (72f314a)
updates to RNA-Seq information (#122) (92607f3)

add ... to all .pages (b0d375f)
fix pixi run serve warnings (#107) (40c23c6)
incremented default port to 8001 (#120) (b086865)
Rename Hackathon Page Request to hackathon_page_request (#66) (a37262f)
Rename hackathon_page_request to hackathon_page_request.md (0f3f821)
update information in Contributing section (#121) (c623418)

add footnotes support and enhance social links in MkDocs configuration (1a4dd35)
add guiding principles for contributing to the handbook (#52) (31e196e)
add header autohide feature, reorganize markdown extensions (fc994d8)
add markdownlint configuration and ignore rules for improved linting (0fe0d8a)
enhance contributing documentation with clearer instructions and new examples (6d7cc6b)
link hpc4health site under software development (#51) (f7361aa)
update onboarding / offboarding section (#53) (3c86b05)

add Markdown and MkDocs documentation sections for improved clarity and guidance (90d0e7e)
add repository name to mkdocs configuration and update icon reference (6bc7cd1)
improve clarity in contributing guide by refining section headings and adding notes (f8b37f1)
refactor software development documentation structure with new sections on development environment and related tools (05eb33b)

formatting (5c25c0e)
formatting (5c25c0e)
git config --local only if we checkout (f819f89)
lint files (2c958fb)
revise handbook introduction and contribute guidelines for clarity and better onboarding experience (2c958fb)

enhance release workflow to publish version of docs using mike after PR release (72345a7)
use mike (ec14831)

Add issue templates (#28) (0a2c861)
Add release and deployment documentation; update pixi.lock for dependencies and versions (27bd2fd)
Create detailed guide for submitting issues, including templates and tips for effective reporting (ac69542)
replace discipline temp files with index.md pages, organize disciplines (ae1bb27)
Update issue templates for bug reports, content updates, documentation questions, and enhancements (30ee8d5)

broken links in disciplines home tab (9393314)
CI to fetch from depth 0 (dbcae75)
remove deploy task so users dont mess it up (92fb375)
update git push command in adding_content.md to set upstream for new branch; fixes #30 (df76944)

add Conventional PR name check (#22) (beb1149)
add documentation on Contributing (156c47e)
add new documentation for code reviews and merging process, improving contributing guidelines for maintainers (#23) (156c47e)
major updates (76ce766)
Set up project structure with MkDocs, added configuration, documentation files, and specified dependencies in pixi.toml (0c17072)
update structure (ceb66dd)