Lab Member Expertise#
This document outlines various expertise of lab members. Helpful for new recruits, writing personnel skills for funding, and clear communication of individual roles.
Expertise Table#
| Expertise | Names |
|---|---|
| Statistical modeling & analysis | Farnoosh Abbas Aghababazadeh |
| Biomarker analysis | Farnoosh Abbas Aghababazadeh, Julia Nguyen, Sisira Kadambat Nair, Nikta Feizi, Nasim BondarSahebi |
| RNAseq processing | Julia Nguyen, Nasim BondarSahebi |
| Microarray processing | Sisira Kadambat Nair |
| ATACseq processing | Julia Nguyen |
| circRNA analysis | Julia Nguyen, Peter Her |
| Exploratory Data Analysis in R | Julia Nguyen, Farnoosh Abbas Aghababazadeh, Kevin Wang, Sisira Kadambat Nair, Nikta Feizi, Michael Tran, Yash Patel, Nasim BondarSahebi |
| Single cell processing | TBA |
| Single cell analysis | TBA |
| Quantitative imaging | Caryn Geady, Katy Scott, Ruiyan Ni, Sejin Kim |
| ML models | Katy Scott, Caryn Geady, Ruiyan Ni, James Bannon, Farnoosh Abbas Aghababazadeh, Nabin Bagale, Shaghayegh Reza, Kewei Ni |
| ML analysis | Katy Scott, Caryn Geady, James Bannon, Ruiyan Ni, Sejin Kim, Nabin Bagale, Shaghayegh Reza, Kewei Ni |
| Deep learning | James Bannon, Katy Scott, Sejin Kim, Ruiyan Ni, Joshua Siraj, Nabin Bagale, Shaghayegh Reza |
| Cancer subtype analysis | Foram Vyas, Nikta Feizi |
| R packages | Jermiah Joseph |
| Clinical oncology | Kevin Wang |
| Full stack web development | Matthew Boccalon |
| Immunotherapy | Farnoosh Abbas Aghababazadeh, Kevin Wang |
| Python packages | Jermiah Joseph, Katy Scott, Sejin Kim |
| Cloud services (GCP) | Jermiah Joseph, Matthew Boccalon, Nabin Bagale, Shaghayegh Reza |
| Grant & Award proposals | Sisira Kadambat Nair |
| LabOps | Sisira Kadambat Nair, Katy Scott |
| Hiring | Sisira Kadambat Nair |
| Payroll, grant budgets, meeting room scheduling, purchases | Soleil Miron |
| Pipelines (Snakemake) | Jermiah Joseph |
| High Performance Computing (HPC) on H4H | Jermiah Joseph |
| Version Control (Git & GitHub) | Jermiah Joseph |