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BHKLab Handbook
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General
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Grants
Onboarding / Offboarding
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BHKLab Handbook
bhklab/handbook
General
General
Mission Statement
Summary of Work
Summary of Work
Confluence SOW Tutorial (outdated)
Communications
Communications
BHKLab Calendar
BHKLab Gmail
Meetings
Meetings
Lab Meeting
Journal Club
Radiomics Meeting
Pharmacogenomics Meeting
The Meeting Owl
Presentations
Presentations
Presentations Database
Presentation Tools
Manuscripts
Manuscripts
Projects
Projects
Disciplines
Disciplines
Data Science
Data Science
Data Curation
Data Curation
Clinical Trial Curation
Clinical Trial Curation
Machine Learning
Machine Learning
Bioinformatics
Bioinformatics
Data Types
Data Types
RNA-Seq
STAR Alignment Guide
DESeq2
Pharmacogenomics
Pharmacogenomics
Imaging
Imaging
Data Sources
Data Sources
Data Types
Data Types
DICOM (Digital Imaging and Communications in Medicine)
NIfTi Format
Radiomics
Radiomics
Tools
Tools
QIPCM
QIPCM
Querying Data from the QIPCM PACS
Software Development
Software Development
Development Environment
Development Environment
Shells
Shells
Integrated Development Environments (IDEs)
Integrated Development Environments (IDEs)
Package Managers
Package Managers
CLI Tools
CLI Tools
Containerization
Containerization
Languages
Languages
Javascript Typescript
Javascript Typescript
Markdown
Markdown
Mkdocs
Mkdocs
Tabbed Code/Content Blocks
Python
Python
R
R
Tidyverse
Tidyverse
Plotting with ggplot2
Rust
Rust
Version Control
Version Control
Git
Git
Introduction
Quick Git Tips
Code Reviews
Code Reviews
Introduction to Code Reviews
Mindsets in Code Reviews
Common Challenges and Solutions in Code Reviews
Conducting a Review
Code Review Presentation
Remote Development
Remote Development
Google Cloud Platform
Google Cloud Platform
Introduction to Google Cloud Platform (GCP)
Google Cloud Artifact Registry
BigQuery
Cloud SQL for MySQL, PostgreSQL, and Microsoft SQL Server
Google Cloud Storage (GCS)
GCP Virtual Machines (VMs)
High Performance Computing for Health
High Performance Computing for Health
Lab Server
Lab Server
GitHub Access
Compute Canada Cloud
Compute Canada Cloud
Grants
Grants
Identifying Suitable Grants
Preparing for Submission
Preparing for Submission
UHN Budget Process
Writing a Strong Grant Proposal
Submission Process
Templates & Resources
Onboarding / Offboarding
Onboarding / Offboarding
Onboarding
Onboarding
UHN Onboarding Policy
BHKLab Onboarding Policy
Configuring UHN VPN
MBP Rotation Students
Lab Member Expertise
Offboarding
Offboarding
Admin Offboarding Instructions
Resources
Resources
Trainee funding opportunities
Contributing
Contributing
Prerequisites
Submitting Issues
Adding Content
Reviewing a Contribution
Merging Pull Requests
Conventional Commits
Release and Deployment
Handbook Changes Over Time
Trainee funding opportunities
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