imgtools CLI

imgtools

A collection of tools for working with medical imaging data.

Usage:

imgtools [OPTIONS] COMMAND [ARGS]...

Options:

Name	Type	Description	Default
--quiet, -q	boolean	Suppress all logging except errors, overrides verbosity options.	False
--verbose, -v	integer range (0 and above)	Increase verbosity of logging, overrides environment variable. (0-3: ERROR, WARNING, INFO, DEBUG).	0
--version	boolean	Show the version and exit.	False
-h, --help	boolean	Show this message and exit.	False

imgtools dicomsort

Sorts DICOM files into directories based on their tags.

Usage:

imgtools dicomsort [OPTIONS] SOURCE_DIRECTORY TARGET_DIRECTORY

Options:

Name	Type	Description	Default
--action, -a	choice (move | copy | symlink | hardlink)	Action to perform on the files.	_required
-n, --dry-run	boolean	Do not move or copy files, just print what would be done. Always recommended to use this first to confirm the operation!	False
-j, --num-workers	integer	Number of worker processes to use for sorting.	1
-h, --help	boolean	Show this message and exit.	False

imgtools find-dicoms

A tool to find DICOM files.

PATH is the directory to search for DICOM files.

SEARCH_INPUT is an optional list of regex patterns to filter the search results.

Usage:

imgtools find-dicoms [OPTIONS] PATH [SEARCH_INPUT]...

Options:

Name	Type	Description	Default
-e, --extension	text	File extension to look for.	dcm
-c, --count	boolean	Whether to just print the count of files found. This is useful for scripts.	False
-l, --limit	integer	The limit of results to return.	None
-ch, --check-header	boolean	Whether to check DICOM header for "DICM" signature.	False
-s, --sorted	boolean	Sort the results alphabetically.	False
-h, --help	boolean	Show this message and exit.	False